When viewing the Technical Program schedule, on the far righthand side
is a column labeled "PLANNER." Use this planner to build your own
schedule. Once you select an event and want to add it to your personal
schedule, just click on the calendar icon of your choice (outlook
calendar, ical calendar or google calendar) and that event will be
stored there. As you select events in this manner, you will have your
own schedule to guide you through the week.
You can also create your personal schedule on the SC11 app (Boopsie) on your smartphone. Simply select a session you want to attend and "add" it to your plan. Continue in this manner until you have created your own personal schedule. All your events will appear under "My Event Planner" on your smartphone.
ABSTRACT: We addresses the problem of performing faster read alignment on GPU devices. This task is extremely computationally intensive as constant progress in sequencing technology leads to everincreasing amounts of sequence data. One of possible solutions for this problem is using the extreme parallel capacities of modern GPU devices.
We found memory limitations to be main performance issue in previous solutions. Attempts have been made to decrease memory consumption of the matching algorithm, and we suggest to make another step in this direction by building a much smaller index using Burrows-Wheeler Transform.
At the same time we use suffix array on host to have constant size output from each kernel and exploit different computational characteristics of both GPU and CPU. We reduced index size 12 times and achieved 3-4 time performance improvement.
Bernd Mohr (Chair) - Juelich Supercomputing Centre